Wen Yao
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Tools

  • DataStatsPlot: an R/Shiny application to visualize raw data points, and their summary statistics
    • Source code: https://github.com/YaoLab-Bioinfo/DataStatsPlot
    • Online use: https://venyao.xyz/DataStatsPlot/
  • NCPbook: a comprehensive database of non-canonical peptides
    • Online use: https://ncp.wiki/ncpbook/
  • shinyCircos V2: updating shinyCircos with more advanced features
    • Source code: https://github.com/YaoLab-Bioinfo/shinyCircos-V2.0
    • Online use: https://venyao.xyz/shinyCircos/
    • Online use: https://asiawang.shinyapps.io/shinyCircos/
  • shinyCircos: an R/Shiny application for interactive creation of Circos plot
    • Source code: https://github.com/YaoLab-Bioinfo/shinyCircos
    • Online use: https://venyao.xyz/shinyCircos-V1/
    • Online use: https://yimingyu.shinyapps.io/shinycircos/
    • Online use: https://venyao.shinyapps.io/shinyCircos/
  • shinyChromosome: an R/Shiny Application for Interactive Creation of Non-circular Plots of Whole Genomes
    • Source code: https://github.com/YaoLab-Bioinfo/shinyChromosome
    • Online use: https://venyao.xyz/shinyChromosome
    • Online use: https://yimingyu.shinyapps.io/shinychromosome
    • Online use: https://venyao.shinyapps.io/shinyChromosome/
  • ECOGEMS: a comprehensive SNP database with 8,584,244 SNP sites among 2058 rice accessions
    • Source code: https://github.com/YaoLab-Bioinfo/ECOGEMS
    • Online use: https://venyao.xyz/ECOGEMS/
  • funRiceGenes: a comprehensive database of functionally characterized rice genes
    • Online use: https://funricegenes.github.io/
    • Online use: https://venyao.xyz/funRiceGenes/
  • binQTL: an R package for mapping QTL using Binned Genotypes
    • Source code: https://github.com/YaoLab-Bioinfo/binQTL
    • Source code: https://github.com/YaoLab-Bioinfo/binQTL.shiny
    • Online use: https://venyao.xyz/binQTL.shiny/
    • Online use: https://venyao.shinyapps.io/binQTL/
  • MaizeSNPDB: a comprehensive SNP database of 1210 maize lines
    • Source code: https://github.com/YaoLab-Bioinfo/MaizeSNPDB
    • Online use: https://venyao.xyz/MaizeSNPDB/
  • intansv: an R package for integrative analysis of structural variations
    • Web site: https://yaolab-bioinfo.github.io/intansv/
    • Source code: https://github.com/YaoLab-Bioinfo/intansv
    • Source code: http://www.bioconductor.org/packages/release/bioc/html/intansv.html
  • LIRBase: a comprehensive collection of long inverted repeats in 427 eukaryotes
    • Source code: https://github.com/YaoLab-Bioinfo/LIRBase
    • Online use: https://venyao.xyz/lirbase/
  • SoybeanGDB: a comprehensive genome database of soybean
    • Source code: https://github.com/YaoLab-Bioinfo/SoybeanGDB
    • Online use: https://venyao.xyz/soybeangdb/