funRiceGenes:
a comprehensive database of functionally characterized rice genes
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Search with predefined keywords
photoinhibition
temperature
disease
leaf
growth
map-based cloning
Chl biosynthesis
chloroplast
development
Kinase
stroma
chloroplast development
photosynthesis
seed
seed size
grain weight
seedlings
seedling
salt
tolerance
ABA
salt stress
stress
ga
R protein
GA
cytoplasm
stress tolerance
stress response
zinc
plant growth
GA biosynthesis
nitrogen
leaf senescence
transcription factor
early leaf senescence
senescence
tillering
sterility
tapetum
anther
fertility
meiotic
cuticle
transporter
microspore
pollen
tapetal
meiosis
anther development
sterile
pollen exine formation
acetylcholinesterase
shoot gravitropism
gravitropic response
submergence
adenylate kinase
auxin
resistance
antiviral immunity
plant development
flower
panicle
spikelet
grain
tiller
mature leaves
stems
seedling leaves
vascular bundle
seedling death
domestication
awn
grains per panicle
grain number
grain length
starch
jasmonate
disease resistance
ja
blight
JA
bacterial blight
quality
ATPase
alkaline tolerance
defense
oxidative stress
alkaline stress
drought
salinity
seed germination
potassium
grain yield
yield
grain size
cell division
magnaporthe oryzae
cell death
immunity
innate immunity
pathogen
drought tolerance
inflorescence
root
iaa
homeostasis
breeding
ABC transporter
metal transport
aluminum
Al tolerance
nucleus
chloroplast developmental
plumule
TPR proteins
salt tolerance
xylem
auxin response
oxidative
stomatal
mitosis
leaf shape
cellulose
cell wall
culm
architecture
dwarf
cell elongation
leaf color
boron-toxicity tolerance
auxin transport
biomass
seed weight
cytokinin transport
abscisic acid
salt sensitivity
manganese
salicylic acid
brown planthopper
defense response
insect
phloem
jasmonic
jasmonic acid
ethylene
brassinosteroid
BR
shoot
height
heading date
Brassinosteroid
plant height
blast
immune response
lemma
palea
cell cycle
stem
floral
floral organ
blast resistance
signal transduction
broad-spectrum disease resistance
protein kinase
growth rate
endosperm
dormancy
BR signaling
lamina
erect
sugar
glycosylation
sheath
xoo
cadmium
cadmium accumulation
vegetative
osmotic tolerance
kinase
root apical meristem
meristem
reproductive
stamen
flower development
floral meristem
ovule
cytokinin
grain filling
gibberellin
chalkiness
reproductive development
male reproductive development
DNA repair
Gibberellin
crown root development
root development
crown
crown root
defense reactions
elicitor-response
anaerobic condition
anoxia
flooded environment
signaling pathway gene
chilling
plasma membrane
melatonin
melatonin biosynthesis
methyltransferase
CxC motif
mitochondria
lateral root
adventitious root
resistant
transcription regulator
heterosis
seed development
iron
cold tolerance
cold stress
telomere lengthening
telomere repeat-binding factor
shoot apical meristem
leaf erectness
cell proliferation
Brassinosteroid Signaling
male sterility
cutin
BR catabolism
lignin
flavonoid
wounding
jasmonate response
internode length
phytohormone
abiotic stress
cellular proliferation
biotic stress
nitrate
chlorophyll content
plant architecture
panicle architecture
organ size
panicle size
inflorescence architecture
GA biosynthetic
strigolactone
branching
tiller number
intercalary meristem
shattering
seed shattering
lignin biosynthesis
spikelet development
grain width
receptor kinase
transcriptional regulator
leaf angle
Ubiquitin
drought stress
tapetum degeneration
panicle length
primary root
root hair
floral organ number
copper
reactive oxygen species
pollen development
pollen wall
root growth
reproductive growth
endosperm development
sucrose
grain quality
drought resistance
stomata
drought sensitivity
PCD
sa
SA
flowering time
chlorophyll biogenesis
flowering
starch biosynthesis
JA biosynthesis
spikelet number
non-differentiated calli
pericarp
ENDOSPERMLESS 1
syncytial endosperm development
water loss
leaf development
phosphate
tryptophan aminotransferase
small leaves
large lamina joint angles
IAA
IAA biosynthesis
auxin biosynthesis
vascular development
organ identity
axillary meristem
spikelet meristem
spikelets per panicle
GA inactivation
root elongation
phosphorus
root length
grain-filling
phosphatase
adaptability
transcriptional activator
grain growth
seed growth
grain protein content
grain protein
Pi
pi
salinity stress
biomass production
blast disease
transcription activator
glucosyltransferase
grain setting
photoassimilate translocation
ethylene response
lodging
lodging resistance
callus
crossover
herbicide resistance
redox homeostasis
hybrid sterility
hybrid weakness
HIGHER YIELD RICE
drought stress response
lesion
defence
defence response
methyl jasmonate
seedling growth
seed length
tiller angle
cold
vernalization
lamina joint
programmed cell death
lesion mimic
translation elongation factor
vesicular
vesicular trafficking
amylose content
epidermal cell morphogenesis
silicon
arsenite
silicon transporter
oxidation step
cell wall synthesis
meiotic recombination
catalytic potency
root meristem
adventitious root formation
node
shoot architecture
ER stress
epidermis
tiller bud outgrowth
sucrose supply
cytokinin response
ubiquitin E3 ligase
anti-recombination activity
Pi uptake
protoplasts
chlorophyll
root architecture
nitrate transporter
cytosol
flooding
osmotic stress
secondary metabolism
plastid
megagametogenesis
CHASE domain
histidine phosphotransfer proteins
oil bodies
insect resistance
heat stress
Heat Stress
Heat Stress Response
iron homeostasis
mature anthers
nucleocytoplasmic shuttling protein
seed phenotype
blight disease
Pollen Fertility
female gametophyte development
amino acid transporter
nutritional quality
glutelin
prolamin
globulin
albumin
gibberellin biosynthesis
ABA biosynthesis
ABA catabolism
arsenic accumulation
As transport
xylem parenchyma
protein phosphatase
Pi homeostasis
actin protein
tapetal programmed cell death
helicase
potassium uptake
fungal blast
dehydrogenase
6mA demethylation
demethylation
pyrophosphorylase
phosphate transport
phosphate signaling
Pi signaling
root system architecture
internode elongation
autophagy
homologous recombination
chloroplast biogenesis
aluminium
Fe
stomatal development
heat tolerance
endoplasmic reticulum stress response
boron transporter
boron uptake
boron
prostrate
endosperm cellularization
phytoalexin production
mycorrhizal symbiosis
AM symbiosis
calcium
aluminum tolerance
fatty acid biosynthesis
peptidoglycan and chitin signaling
chitin signaling
peptidoglycan signaling
chitin elicitor signaling pathway
immunity signalling
symbiosis
RSV
rice stripe virus
histone trimethylation
chilling stress
JA receptor
ent-CDP synthase
GA deficiency
biosynthesis of phytoalexins
cadmium tolerance
stamen number
phosphate starvation signaling
phosphate starvation
root initiation
antimicrobial activity
sucrose transporter
seed dormancy
bacterial blight disease
bacterial disease
JA signaling
glucanase
silicon-dependent strengthening of rice cell wall
floral meristem determinacy
plant stature
ER quality control
submergence tolerance
abscisic acid biosynthesis
crown root elongation
crown root initiation
carpel differentiation
stoma differentiation
cell fate transition
florigen transport
disease development
fragile shoot
drooping shoot
magnesium
brassinosteroid phytohormone pathway
steles
leaf rolling
Salt Sensitivity
tetrapyrrole biosynthesis
homeobox gene
root number
root meristem size
double ovules
developmental abnormality
megagametophyte
empty-glume identity
floral organ number control
stem strength
JA signalling repressor
aminobutyric acid
transaminase
phosphate homeostasis
grain shape
ovule identity
lateral root number
lateral root length
pathogen resistance
NO3- transporter
GA deactivation
stigma length
rachillae
wounding response
pollen hydration
N-glycan formation
auxin-mediated root development
Holliday junctions
metallolthionein
Zn distribution
DNA damaging
phosphate acquisition
MYB transcriptional activator
JA signalling
boric acid
boron distribution
exodermal cells
phosphate starvation response
N utilization
photosystem
transcription suppressor
secondary cell wall
pollen coat formation
aluminium internalization
sucrose translocation
cuticular wax biosynthesis
wax biosynthesis
drought and oxidative stress
Fe accumulation
stigma number
homologous chromosome pairing
angle of the lamina joint
vacuolar morphology
bioethanol
bioethanol production
BR homeostasis
embryo
sulphotransferase
callus browning
sucrose synthase
bidirectional helicase
seed filling
style length
glycosyltransferase
flavonoid metabolism
flavone
cuticular wax formation
root epidermal cells
leaf flattening
cuticle formation
reticulum stress response
inflorescence development
root thickness
plant defense signaling
aquaporin water channel
super apical dormant
abscission-zone development
ethylene homeostasis
ethylene production
GKSKSF domain
strigolactone biosynthesis
Xoo
pedicels
cellular activities
embryo development
transcriptional repressor
young panicles
PSS domain
internode development
tyrosine biosynthesis
Xoo pathotypes
XA21 signaling
shoot meristem
Down-regulated genes
Fe efficiency
bacteria blight disease
Leu-rich repeat receptor kinase
AM colonization
pollen wall morphogenesis
stomatal density
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Search genes collected in funRiceGenes by sequence similarity using BLAST
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MSU or RAPdb gene model?
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Search with any word concerning rice functional genomic studies
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Convert between MSU and RAPdb gene IDs
Convert between indica and japonica gene IDs
Convert between MSU genomic locus and RAPdb genomic locus
RAPdb to MSU
MSU to RAPdb
Result
Convert between indica and japonica gene IDs
MSU Nipponbare
RAPdb Nipponbare
Minghui 63
Zhenshan 97
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Extract data using MSU genomic locus
Extract data using RAP genomic locus
Extract data by genomic location
LOC_Os07g49460 LOC_Os06g40780 LOC_Os05g06660
Os02g0677300 Os10g0528100 Os03g0646900
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RiceNet
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