funRiceGenes:
a comprehensive database of functionally characterized rice genes
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6mA demethylation
ABA
ABA biosynthesis
ABA catabolism
ABC transporter
abiotic stress
abscisic acid
abscisic acid biosynthesis
abscission-zone development
acetylcholinesterase
actin protein
adaptability
adenylate kinase
adventitious root
adventitious root formation
Al tolerance
albumin
alkaline stress
alkaline tolerance
aluminium
aluminium internalization
aluminum
aluminum tolerance
AM colonization
AM symbiosis
amino acid transporter
aminobutyric acid
amylose content
anaerobic condition
angle of the lamina joint
anoxia
anther
anther development
anti-recombination activity
antimicrobial activity
antiviral immunity
aquaporin water channel
architecture
arsenic accumulation
arsenite
As transport
ATPase
autophagy
auxin
auxin biosynthesis
auxin response
auxin transport
auxin-mediated root development
awn
axillary meristem
bacteria blight disease
bacterial blight
bacterial blight disease
bacterial disease
bidirectional helicase
bioethanol
bioethanol production
biomass
biomass production
biosynthesis of phytoalexins
biotic stress
blast
blast disease
blast resistance
blight
blight disease
boric acid
boron
boron distribution
boron transporter
boron uptake
boron-toxicity tolerance
BR
BR catabolism
BR homeostasis
BR signaling
branching
brassinosteroid
Brassinosteroid
brassinosteroid phytohormone pathway
Brassinosteroid Signaling
breeding
broad-spectrum disease resistance
brown planthopper
cadmium
cadmium accumulation
cadmium tolerance
calcium
callus
callus browning
carpel differentiation
catalytic potency
cell cycle
cell death
cell division
cell elongation
cell fate transition
cell proliferation
cell wall
cell wall synthesis
cellular activities
cellular proliferation
cellulose
chalkiness
CHASE domain
chilling
chilling stress
chitin elicitor signaling pathway
chitin signaling
Chl biosynthesis
chlorophyll
chlorophyll biogenesis
chlorophyll content
chloroplast
chloroplast biogenesis
chloroplast development
chloroplast developmental
cold
cold stress
cold tolerance
copper
crossover
crown
crown root
crown root development
crown root elongation
crown root initiation
culm
cuticle
cuticle formation
cuticular wax biosynthesis
cuticular wax formation
cutin
CxC motif
cytokinin
cytokinin response
cytokinin transport
cytoplasm
cytosol
defence
defence response
defense
defense reactions
defense response
dehydrogenase
demethylation
development
developmental abnormality
disease
disease development
disease resistance
DNA damaging
DNA repair
domestication
dormancy
double ovules
Down-regulated genes
drooping shoot
drought
drought and oxidative stress
drought resistance
drought sensitivity
drought stress
drought stress response
drought tolerance
dwarf
early leaf senescence
elicitor-response
embryo
embryo development
empty-glume identity
endoplasmic reticulum stress response
endosperm
endosperm cellularization
endosperm development
ENDOSPERMLESS 1
ent-CDP synthase
epidermal cell morphogenesis
epidermis
ER quality control
ER stress
erect
ethylene
ethylene homeostasis
ethylene production
ethylene response
exodermal cells
fatty acid biosynthesis
Fe
Fe accumulation
Fe efficiency
female gametophyte development
fertility
flavone
flavonoid
flavonoid metabolism
flooded environment
flooding
floral
floral meristem
floral meristem determinacy
floral organ
floral organ number
floral organ number control
florigen transport
flower
flower development
flowering
flowering time
fragile shoot
fungal blast
ga
GA
GA biosynthesis
GA biosynthetic
GA deactivation
GA deficiency
GA inactivation
gibberellin
Gibberellin
gibberellin biosynthesis
GKSKSF domain
globulin
glucanase
glucosyltransferase
glutelin
glycosylation
glycosyltransferase
grain
grain filling
grain growth
grain length
grain number
grain protein
grain protein content
grain quality
grain setting
grain shape
grain size
grain weight
grain width
grain yield
grain-filling
grains per panicle
gravitropic response
growth
growth rate
heading date
heat stress
Heat Stress
Heat Stress Response
heat tolerance
height
helicase
herbicide resistance
heterosis
HIGHER YIELD RICE
histidine phosphotransfer proteins
histone trimethylation
Holliday junctions
homeobox gene
homeostasis
homologous chromosome pairing
homologous recombination
hybrid sterility
hybrid weakness
iaa
IAA
IAA biosynthesis
immune response
immunity
immunity signalling
inflorescence
inflorescence architecture
inflorescence development
innate immunity
insect
insect resistance
intercalary meristem
internode development
internode elongation
internode length
iron
iron homeostasis
ja
JA
JA biosynthesis
JA receptor
JA signaling
JA signalling
JA signalling repressor
jasmonate
jasmonate response
jasmonic
jasmonic acid
kinase
Kinase
lamina
lamina joint
large lamina joint angles
lateral root
lateral root length
lateral root number
leaf
leaf angle
leaf color
leaf development
leaf erectness
leaf flattening
leaf rolling
leaf senescence
leaf shape
lemma
lesion
lesion mimic
Leu-rich repeat receptor kinase
lignin
lignin biosynthesis
lodging
lodging resistance
magnaporthe oryzae
magnesium
male reproductive development
male sterility
manganese
map-based cloning
mature anthers
mature leaves
megagametogenesis
megagametophyte
meiosis
meiotic
meiotic recombination
melatonin
melatonin biosynthesis
meristem
metal transport
metallolthionein
methyl jasmonate
methyltransferase
microspore
mitochondria
mitosis
MYB transcriptional activator
mycorrhizal symbiosis
N utilization
N-glycan formation
nitrate
nitrate transporter
nitrogen
NO3- transporter
node
non-differentiated calli
nucleocytoplasmic shuttling protein
nucleus
nutritional quality
oil bodies
organ identity
organ size
osmotic stress
osmotic tolerance
ovule
ovule identity
oxidation step
oxidative
oxidative stress
palea
panicle
panicle architecture
panicle length
panicle size
pathogen
pathogen resistance
PCD
pedicels
peptidoglycan and chitin signaling
peptidoglycan signaling
pericarp
phloem
phosphatase
phosphate
phosphate acquisition
phosphate homeostasis
phosphate signaling
phosphate starvation
phosphate starvation response
phosphate starvation signaling
phosphate transport
phosphorus
photoassimilate translocation
photoinhibition
photosynthesis
photosystem
phytoalexin production
phytohormone
pi
Pi
Pi homeostasis
Pi signaling
Pi uptake
plant architecture
plant defense signaling
plant development
plant growth
plant height
plant stature
plasma membrane
plastid
plumule
pollen
pollen coat formation
pollen development
pollen exine formation
Pollen Fertility
pollen hydration
pollen wall
pollen wall morphogenesis
potassium
potassium uptake
primary root
programmed cell death
prolamin
prostrate
protein kinase
protein phosphatase
protoplasts
PSS domain
pyrophosphorylase
quality
R protein
rachillae
reactive oxygen species
receptor kinase
redox homeostasis
reproductive
reproductive development
reproductive growth
resistance
resistant
reticulum stress response
rice stripe virus
root
root apical meristem
root architecture
root development
root elongation
root epidermal cells
root growth
root hair
root initiation
root length
root meristem
root meristem size
root number
root system architecture
root thickness
RSV
sa
SA
salicylic acid
salinity
salinity stress
salt
salt sensitivity
Salt Sensitivity
salt stress
salt tolerance
secondary cell wall
secondary metabolism
seed
seed development
seed dormancy
seed filling
seed germination
seed growth
seed length
seed phenotype
seed shattering
seed size
seed weight
seedling
seedling death
seedling growth
seedling leaves
seedlings
senescence
shattering
sheath
shoot
shoot apical meristem
shoot architecture
shoot gravitropism
shoot meristem
signal transduction
signaling pathway gene
silicon
silicon transporter
silicon-dependent strengthening of rice cell wall
small leaves
spikelet
spikelet development
spikelet meristem
spikelet number
spikelets per panicle
stamen
stamen number
starch
starch biosynthesis
steles
stem
stem strength
stems
sterile
sterility
stigma length
stigma number
stoma differentiation
stomata
stomatal
stomatal density
stomatal development
stress
stress response
stress tolerance
strigolactone
strigolactone biosynthesis
stroma
style length
submergence
submergence tolerance
sucrose
sucrose supply
sucrose synthase
sucrose translocation
sucrose transporter
sugar
sulphotransferase
super apical dormant
symbiosis
syncytial endosperm development
tapetal
tapetal programmed cell death
tapetum
tapetum degeneration
telomere lengthening
telomere repeat-binding factor
temperature
tetrapyrrole biosynthesis
tiller
tiller angle
tiller bud outgrowth
tiller number
tillering
tolerance
TPR proteins
transaminase
transcription activator
transcription factor
transcription regulator
transcription suppressor
transcriptional activator
transcriptional regulator
transcriptional repressor
translation elongation factor
transporter
tryptophan aminotransferase
tyrosine biosynthesis
Ubiquitin
ubiquitin E3 ligase
vacuolar morphology
vascular bundle
vascular development
vegetative
vernalization
vesicular
vesicular trafficking
water loss
wax biosynthesis
wounding
wounding response
XA21 signaling
xoo
Xoo
Xoo pathotypes
xylem
xylem parenchyma
yield
young panicles
zinc
Zn distribution
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Search genes collected in funRiceGenes by sequence similarity using BLAST
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MSU or RAPdb gene model?
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Search with any word concerning rice functional genomic studies
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Convert between MSU and RAPdb gene IDs
Convert between indica and japonica gene IDs
Convert between MSU genomic locus and RAPdb genomic locus
RAPdb to MSU
MSU to RAPdb
Result
Convert between indica and japonica gene IDs
MSU Nipponbare
RAPdb Nipponbare
Minghui 63
Zhenshan 97
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Extract data using RAP genomic locus
Extract data by genomic location
LOC_Os07g49460 LOC_Os06g40780 LOC_Os05g06660
Os02g0677300 Os10g0528100 Os03g0646900
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RiceNet
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